PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07921.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 202aa    MW: 22545.5 Da    PI: 9.6326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07921.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20553153
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                             ++++GVr+++ +g+WvAeIr+p        +r++lg+fgtaeeAa+a+++a+  +
  Sme2.5_07921.1_g00003.1  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRVWLGTFGTAEEAARAYDEAAVLM 53
                             59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-34565No hitNo description
SMARTSM003806.9E-38669IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20664IPR016177DNA-binding domain
PfamPF008471.3E-13650IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-32664IPR001471AP2/ERF domain
PROSITE profilePS5103221.852663IPR001471AP2/ERF domain
PRINTSPR003673.3E-10718IPR001471AP2/ERF domain
PRINTSPR003673.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVQAKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFGTAE EAARAYDEAA VLMSGRNAKT  60
NFPVQAQLAT DENKNDNPKS LSGSSSSLSA ILSDKLRKSC KSPSPSLTCL RLDTESSNIG  120
VWQKRAGARP DSNWVMTVEF GKKKMVNNNE KIIIPDKNMN SSTTSSSSPE NSIEIEEGKE  180
CGVMSEEERM ALQMIEELLN RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-16565162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-16265165ATERF1
3gcc_A8e-16265165ATERF1
5wx9_A9e-166701479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364209.11e-115PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI332e-75WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLM0ZIY51e-114M0ZIY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000017031e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-63ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]