PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07791.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 526aa    MW: 58529.3 Da    PI: 8.0079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07791.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.1e-17333379455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  Sme2.5_07791.1_g00001.1 333 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 379
                              6*************************9.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.476329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-18332383No hitNo description
SuperFamilySSF474593.53E-20332406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-14333379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-20333387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MNPCLPEWNM ETELPVPHQK KSMGFDHELV ELLWRNGEVV LHSQTHKKHP GYDPNECRQF  60
NKHDQPTLRV AGNQTNFIRD DETVSWLNCP IDDSSFDKEF CSPFLSDIST TPPLGEAAHK  120
SVRHTEDNNK VYKFDPSGIN HVLPQAHHSG FDPNPMPPPR FHNFGSVQQQ QHHTVGQPQK  180
GVNFPPPVRS SNVQLSGKEA RSNLMKEGSV RTVGSSHCGS NQVDTSRFSS SANRGLSAAM  240
ITDYTGKISP QSDTMDRDTF EPANTSSSSG RSGSSYARAC NQSTATNSQS HKRKSRDGEE  300
PECQSKADEL ESAGGNKSAQ KSGTARRSRA AEVHNLSERR RRDRINEKMK ALQELLPHST  360
KTDKASMLDE AIEYLKSLQM QLQMMWMGSG MASMMFPGVQ HYMSRMGMGM GPPSVPSIHN  420
ALHLTRLPLV DPSIPLTQAA PNNQAAMCQN SMLNQVNYQC HLQNPNFPDQ YASYMGFHPL  480
QGASQPAMNI FGLGSHTAQQ SQQLPNPTNR QGNCFIWPIV YHGTRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001294937.10.0transcription factor PIF4
RefseqXP_004243631.10.0PREDICTED: transcription factor PIF4
RefseqXP_010323941.10.0PREDICTED: transcription factor PIF4
RefseqXP_015082675.10.0PREDICTED: transcription factor PIF4
RefseqXP_015082676.10.0PREDICTED: transcription factor PIF4
TrEMBLM1BAZ90.0M1BAZ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000411550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-38phytochrome interacting factor 4