PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07550.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 243aa    MW: 27463.2 Da    PI: 8.5787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07550.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-1463109354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+h+++E+rRRdriN  +++Lr+l+P++     +K++Ka  L+ +ve++k+L
  Sme2.5_07550.1_g00004.1  63 RSHSQAEKRRRDRINAQLSTLRKLIPSS-----EKMDKAGLLRSVVEHVKDL 109
                              78*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.15860109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1363118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-1263110No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1563112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00157155196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMDDSSCWSE STGTLSWVHN FQQLNCQVSP FLFPTNSCDV TYHHNSSHFP TWPQQFEGFS  60
ASRSHSQAEK RRRDRINAQL STLRKLIPSS EKMDKAGLLR SVVEHVKDLK GRAKEISSVS  120
NTPSDIDEII IDEEEGTCTN KNKDSIAHSS ILFKVSFCCD DRPELFSELN RGLKNLKLTT  180
TEANITSLCG RVKCIFSLQS ISDVCSHSLK QSLRVLLARI ATSPCTSNFR IKSKRQRFFL  240
PAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-87HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338818.11e-101PREDICTED: transcription factor bHLH51-like
TrEMBLM1B9X71e-101M1B9X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000404481e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-36bHLH family protein