PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07421.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 656aa    MW: 71426.1 Da    PI: 7.1046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07421.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16360406455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Sme2.5_07421.1_g00001.1 360 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 406
                              6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-20353411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-19354411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-17359410No hitNo description
PfamPF000106.6E-14360406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-19362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MNHSVPDFDM DDDYSIPTSS GLTRPKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKSQI  60
GNASGGGGDA VIPSDQAAGR EIQHVEETTS QHLFMQEDEM ASWLHYPLDD PSFERDLYSD  120
LLYPTPSSTV STTAPPRESG TSTVEIRPPQ PQPSPAAPIL TAPRPPIPPS RRSFTESSNR  180
FQSFGHFSRL PRARLEPGPA NLSKSPRDST VVDTNETPIS RQESRISHVA DNVGCSTINR  240
TGTATTSTIR ETATTCDISM TSSPGGSGNS VSASAEPPPP APSHQAAATT AAEDRKRKGR  300
EMDDGEERSF QSGGGEGTLA IAGSLLPFLL TRKDAEFESP DTKKQAHGST STKRSRAAEV  360
HNLSERRRRD RINEKMKALQ ELIPRCNKTD KASMLDEAIE YLKSLQLQVQ DKVGTLIGAT  420
IKLRCSRAIN SYFIQSHISP GTRHGTGPNV SHLRAQKWTE EGIGTRLPIS LRDYSSRWMM  480
SMGCGMVPMV YPGMQPYMPP MGMGMGMGMG MEIGMNRPMV PYPPLLPGAA MQNAAAAAQI  540
GPRFPIPPFH LPTVPVPDPS RMQASSQPDP MLNPLVAHNS NQPRLSNFND PYQQFFGLQQ  600
VQVALPQASP SSSTWSLTHF INQTVEQPIN NKSGSSKEVG NPENHQSGQL PGGQNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364369ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247109.10.0transcription factor PIF1
TrEMBLM1BMV20.0M1BMV2_SOLTU; Uncharacterized protein
STRINGSolyc09g063010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-32phytochrome interacting factor 3-like 5