PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07215.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 536aa    MW: 59939.3 Da    PI: 6.3835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07215.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13366409755
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                Er+RR+ri+++++ Lr l+P+ +      K++K++iL  Av+YI++Lq
  Sme2.5_07215.1_g00003.1 366 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAVDYINELQ 409
                              57*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-1940219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.516359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-14361413No hitNo description
SuperFamilySSF474593.66E-17361428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17366427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11367409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSMAGLSSLE ESSVNIYHKY SNFKKISSTY YFTMEKALEC LRPLVDSKNW EYCVVWKLGD  60
DPSRFIEWMG CCCSGANGVD VNVKKENGGK QKFTALCRDI KVQHPIRTKA CEALAHCPLS  120
ISLYSGIQGE VVTSNEPKWI NHAEISNSNL SHVSTTLKIE VFTELSRLIS DMFQIEFFDS  180
LQELKGTLVL IPVAGGLVEL YNSKLIHKDQ KTINFIINRF KLGSEEANSS IAQKEDQVLD  240
FFPFEKSSFC APLMQYATSF PSSAPYISQV SESSANPSIQ GSSTGSIPSN ERTLCHSPSD  300
HLSRNVPLSH ATEGYFEHME LQCGENLSRM EGTAFPWKQE NYVVAGDMFT MGKKRQKGPY  360
QSKNLVTERK RRNRIKDGLF ALRALVPNIS KMDKVAILGD AVDYINELQE KVKLYETELN  420
EIEAEVTNNE APEMLLSDTT EMSKVSRPTN QKTQISIEVE MNQIGAREFL LKVSGSHKSR  480
GFTQLMKAMN HLGLEIVNVS CTTSGGEIVS VFIVEANGDR VLDAQKLRSS LIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351357GKKRQKG
2352371KKRQKGPYQSKNLVTERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1887810.0AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075794.10.0transcription factor bHLH90
TrEMBLK4BW610.0K4BW61_SOLLC; Uncharacterized protein
STRINGSolyc05g005300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-41bHLH family protein