PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07028.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 295aa    MW: 33115.4 Da    PI: 4.2856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07028.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-182576155
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+y+GV +++ +grW+A+I   +   g +k+ +lg+fgt eeAa+a++ a+ +++g
  Sme2.5_07028.1_g00002.1 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFGTQEEAAAAYDMAAIEYRG 76
                             89****99**********99966...3.6*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-132576IPR001471AP2/ERF domain
CDDcd000181.02E-172586No hitNo description
SuperFamilySSF541712.94E-182586IPR016177DNA-binding domain
PROSITE profilePS5103218.3212684IPR001471AP2/ERF domain
SMARTSM003801.6E-262690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-182684IPR001471AP2/ERF domain
PRINTSPR003677.8E-52738IPR001471AP2/ERF domain
PRINTSPR003677.8E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQRLSKEEYL ASLRRMSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTFGTQ  60
EEAAAAYDMA AIEYRGPNAV TNFDISRYAD HFKKLRQPDQ LPEQENTESS AEVQSNEMIE  120
PYLPIQQEEN QLDFQIAELA AEPMVVPKLE FTPALDSYEV TQPKLQKLES AADTTKAKDH  180
EGIEDYPWLN MYLDNSCGSL PVSDFSPDKP SDLMDLLDDT SFDNSIDFNF YEQSSENELN  240
LKEFSDSMII DEIEATNEEG SKNPSTSPTS SSSVSRTTSI CSGMKDDGGL ASSKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347702.11e-157PREDICTED: ethylene-responsive transcription factor WRI1-like
TrEMBLM1CML91e-156M1CML9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000707351e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91342227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.22e-48ERF family protein