PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06668.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 211aa    MW: 24025.2 Da    PI: 8.4766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06668.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000121866554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                              +e+E++RR+ +++  +eL +llP   +   s+  +   +    Av+YI sL
  Sme2.5_06668.1_g00002.1 18 RKEVEKNRRNYMKNLCNELYSLLPItHV---SQEtMVMQDKIDAAVKYIESL 66
                             589*********************8553...222233333334566666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-8582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.1341366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-71782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDGGRSSTSA PARAKLERKE VEKNRRNYMK NLCNELYSLL PITHVSQETM VMQDKIDAAV  60
KYIESLKMKL EKNKRQLEEL KMGPKRSQPL NATNEPGPIA KSAPEIEFHE MGPNMVVVLI  120
TSLYNIAITS FDYAMRKVLK LCIQAFHHSM EMETLCCRFL MKLRYCFGIL PKINHSLILN  180
CLGPSCAFPG RSGSCDVDVI EDCFISSIFY F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161047.11e-51PREDICTED: uncharacterized protein LOC107059131
TrEMBLA0A2G3BCS91e-49A0A2G3BCS9_CAPCH; Uncharacterized protein
STRINGSolyc10g008270.2.16e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-11bHLH family protein