PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06479.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 315aa    MW: 35091.1 Da    PI: 6.6046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06479.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09176223455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_06479.1_g00003.1 176 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 223
                              8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.13E-10170227No hitNo description
SuperFamilySSF474593.01E-17170240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16172237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-7176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MASFSSHQLQ HNNPFLVDSV FLPSSMSGFF EEPNNSCIVQ NSFPQFYQQE FPVVHENSFC  60
FDQTTNVSHD EPNSVHTNKS SSSITLDMDS SSVTDKIESG SNNNKANVTS MEKKRKSREG  120
SSSMTSAHSK NVKQSDNGKK KKTNSKLVAK DEKKANEEAP TGYIHVRARR GQATDSHSLA  180
ERVRREKISE RMKILQSLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLTSVNPMY  240
YDFGMDLDAL MVKPDDQSLS GLETQMLNIQ QGSTTTTSQT AEVIANTNSG YPFLDNSTSL  300
MFQQAHFPNS IPQTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8231690.0JQ823169.1 Solanum lycopersicum basic helix-loop-helix (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363974.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLM1BRC80.0M1BRC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000511370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-57bHLH family protein