PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06337.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 315aa    MW: 34914.6 Da    PI: 5.9898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06337.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09228271755
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Sme2.5_06337.1_g00004.1 228 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 271
                              5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11222279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-13223281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-11223275No hitNo description
SMARTSM003537.4E-11227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6229271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MYMALAKEHV VMSDTKMGMV DNYDQYYDGE FGMNDHSSPE LYGINEEEPP KSIFEECENS  60
EKTSPKIAKN FGLSSSNSSL SSPSSSNSNG HSVINFKGGY GNFMYSANGS LLSFEQSERF  120
CPNPRMMSSI NQVEGSVWED NNLHYQNCSS NTSPRVINEN SNNNGMPFGW LNSEANASTT  180
THVEESHFNK RPSAEESMQT SKKQCTGGSK KGKPNNNNSI GTKDPQSIAA KNRRERISER  240
LKILQELVPN GSKVDLVTML EKAIGYVKFL QLQVKVLATD EFWPTQGGKA PDISQVKEAI  300
DAILATQRDR NSTSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169078.10.0PREDICTED: transcription factor bHLH83-like
SwissprotQ9C7077e-57BH083_ARATH; Transcription factor bHLH83
TrEMBLM1D0P90.0M1D0P9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000787760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-55ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Lin CY, et al.
    Pathways involved in vanadate-induced root hair formation in Arabidopsis.
    Physiol Plant, 2015. 153(1): p. 137-48
    [PMID:24833217]
  4. Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
    Root hairs.
    Arabidopsis Book, 2014. 12: p. e0172
    [PMID:24982600]
  5. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  6. Moro CF, et al.
    S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
    New Phytol., 2017. 213(4): p. 1771-1786
    [PMID:27880005]
  7. Bahmani R,Kim DG,Kim JA,Hwang S
    The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1763
    [PMID:27933081]
  8. Liao X,Lovett B,Fang W,St Leger RJ
    Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
    Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
    [PMID:28708056]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]