PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06205.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 238aa    MW: 26990.7 Da    PI: 4.8113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06205.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19136186255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Sme2.5_06205.1_g00001.1 136 HYRGVRQRP-WGKFAAEIRDPAKNG--QRVWLGTYETAEDAALAYDRAAFRMRG 186
                              7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-32135194IPR001471AP2/ERF domain
PROSITE profilePS5103224.197136194IPR001471AP2/ERF domain
PfamPF008474.6E-14136186IPR001471AP2/ERF domain
SMARTSM003801.7E-40136200IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23136196IPR016177DNA-binding domain
CDDcd000186.26E-32136194No hitNo description
PRINTSPR003671.3E-10137148IPR001471AP2/ERF domain
PRINTSPR003671.3E-10160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFGDIDFEND YSLLESIKLH LLEDWESEVP VTSSDNSTTS TSVYSQNNSI ESTTFPDSLS  60
NEFDCTTDTF LSDFLNDCAG YEWQPSNPAI QHVKSEPEIW NFEEFAARQD TAEEVKLQPR  120
PPVVTARPQT MQTDRHYRGV RQRPWGKFAA EIRDPAKNGQ RVWLGTYETA EDAALAYDRA  180
AFRMRGSRAM LNFPLRVNSG EPEPVRVSSK RSSKSPECYS SSSDNASGKR RKKVPQVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-40135201470ATERF1
3gcc_A3e-40135201470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359238.11e-110PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803376e-52EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLM1CHG41e-109M1CHG4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000675341e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-39ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]