PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06129.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 322aa    MW: 36038.1 Da    PI: 4.8163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06129.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-112482881055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sme2.5_06129.1_g00005.1 248 RKRRERINDRLKTLQSLIPNG-----TKVDISTMLEEAVQYVKFLQ 288
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14240304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-13243297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-12247292No hitNo description
PfamPF000104.9E-9248288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPVASMSEG DWSSFSGMCS TEEADFMAQL LGNCSLPNDQ LSGSSNNYGV YSSFWNGNML  60
GSGATEEISV YSSNDTNYSG GTGFLFPPSS HESYYPSHSQ PILMRNDSSI TTERGVMDTS  120
NNLIEDVNNE NMEFDENMPE TVLDGEGLHL GRIDYDRYQE HKMDHGPPES SKKRARLHGH  180
VPKNKRSTKL QTDVKIAEMD SKNKAVLQRQ NSIISCCSED ESNVSLELTP KSRASRGSAM  240
DPQSLYARKR RERINDRLKT LQSLIPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDDLW  300
MYAPIAYNGM DLGLDLRINI PK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544221.11e-171PREDICTED: transcription factor bHLH84-like
TrEMBLA0A2G2YKN61e-171A0A2G2YKN6_CAPAN; Transcription factor bHLH54
TrEMBLA0A2G3BDV81e-171A0A2G3BDV8_CAPCH; Transcription factor bHLH54
STRINGPGSC0003DMT4000897281e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-61bHLH family protein