PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06123.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 282aa    MW: 31791.8 Da    PI: 6.7704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06123.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.8e-07222266454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + n +Er+RR ++++    L+ ++P a      +++ +++L +Av+Y+ksL
  Sme2.5_06123.1_g00003.1 222 TSNCNERKRR-KLKKMVKALKGIVPGA-----SRMNTVTVLDEAVRYLKSL 266
                              6799****98.7**************9.....7****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.893217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-9221276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4222266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-8222271No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8222277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-7224272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MYIAITLKRY RAVKEAGEIK MHVGSVAYYQ LMLVCQVLMQ SNYQFSPQKP FVSLEDQIAG  60
GNIFDIPAPS VFGTAALPTG FKSPVPFHGF EFQSSEACPK NFIIFDQTDY RSQIMYHPVM  120
ASKFPYPDLN FNSTFFQDGL ERKNANNENT EVSSYLKEDS DDINALLSSE GEEREEYDEE  180
EVSTARTDAN YGCSSPESYS NYDCQSKKSR TSSFRKSSGS STSNCNERKR RKLKKMVKAL  240
KGIVPGASRM NTVTVLDEAV RYLKSLKVEV EKLGVENLKT FA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556257.11e-150PREDICTED: transcription factor bHLH144-like
TrEMBLA0A0V0IHK31e-145A0A0V0IHK3_SOLCH; Putative transcription factor bHLH-like
STRINGPGSC0003DMT4000213831e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-32bHLH family protein