PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06085.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 364aa    MW: 41013.8 Da    PI: 7.7667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06085.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-072272671055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+++ ++   L +llP++     kK++ a++Le+A +Y+k Lq
  Sme2.5_06085.1_g00003.1 227 RKRRQKLSEKTRCLEKLLPWD-----KKMDTATMLEEAYKYVKFLQ 267
                              9*******************9.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.639217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-5223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10224276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9226274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4227267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-6227271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLCASAMERK LPLIMERKLP LIPPEFNAGE ALLPIMDSDE AFINSMYDGM SYQSLLSLSL  60
DHGSYGEVKP FLAHSSFHPS LVTDNMLCTS AASSQIKQSP ATSHDFSTGD HFAWLNKKEI  120
NPDAGQKMKC PKLEPVTDNL QLYPYNNNEV FLSEPFNRFS NTSSGYGYLS LPDLRCFEQP  180
NYLDFHYGDS SSIVPAENRV AEPVPPVSKV MSSLLKNRQP YSSSTTRKRR QKLSEKTRCL  240
EKLLPWDKKM DTATMLEEAY KYVKFLQAQI SVLQSMPPLV DGGAPSDQDR NRANEAKAVS  300
VFGTLAKLNR QQLLQVFLNS PVAQTYLYSE GCCVFSVEQL VQYRKIAQRN ALYRQSLFFS  360
GMLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230TRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360553.10.0PREDICTED: transcription factor bHLH69
TrEMBLM1CH100.0M1CH10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000672870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.17e-26bHLH family protein