PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05849.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 373aa    MW: 41167.6 Da    PI: 7.0555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05849.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-052322543355
                              .TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  33 apskKlsKaeiLekAveYIksLq 55 
                              ++ ++ +Ka++L +++eY+k+Lq
  Sme2.5_05849.1_g00001.1 232 QSERRIDKASMLDEVIEYLKQLQ 254
                              45566*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-6216262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-4231258No hitNo description
SuperFamilySSF474593.53E-6233273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDYEVAELTW EKGQLVMHGL GPARVLNKPL STCSPTKYTC AGGTLESLVN QATSVIPHSQ  60
KSSMDGDGDK EDDFARWFDN CLLDTQTPTM AVVPTSSTNT PNSQQQVPQS IHPSKCGSVD  120
DAKMGSSYEE IPKNFELMLY EGHNNTAHQT VKHRDTIETD ERELGVERLT AASMGSPENT  180
SKRCNSNRDF ISLSKTQRVA GIDEHKDGDE KKGSKISSLS TKKSRAAATH NQSERRIDKA  240
SMLDEVIEYL KQLQAQVKAM SRMVHVNMPP SPMMLPNMAL QQLQMSMMGL ARPMDVNALN  300
RSNITTMPSV PHPAAPSNFN MPMPSPGASF VPDPLATFLP AAQSQPMRMD AYGRMAAFYQ  360
QYLRSNANLG FKY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164403.11e-111PREDICTED: transcription factor UNE10-like
TrEMBLA0A3Q7ID061e-107A0A3Q7ID06_SOLLC; Uncharacterized protein
STRINGSolyc10g018510.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-44bHLH family protein