PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05796.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 273aa    MW: 30443.7 Da    PI: 9.7512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05796.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.7e-113878441
                             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                   bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
                              k  rr+++NReAAr+sRqRKka++++Le+   + ++Le+e
  Sme2.5_05796.1_g00006.1 38 AKTLRRLAQNREAARKSRQRKKAYVQQLETsriRLAQLEQE 78
                             6889************************9633356666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-93184No hitNo description
SMARTSM003384.9E-835111IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1053781IPR004827Basic-leucine zipper domain
PfamPF001702.8E-83878IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.7E-73975No hitNo description
PROSITE patternPS0003604257IPR004827Basic-leucine zipper domain
PfamPF141442.4E-30119194IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKSESPRTGR VSHTETPSNS NYDKKKGGGS TSDKVTDAKT LRRLAQNREA ARKSRQRKKA  60
YVQQLETSRI RLAQLEQEIQ RARSQGLFIG GGAAGPNISS DAAMFDMEYS RWLNDDQRQI  120
SELRTALQAH IGDGELRVIV DAYIAHYDHI FLLKGIAAKS DVFHLLTGIW ASPAERCFLW  180
LGGFRPSELI KMLITQLDPL TQQQVVGIYS LQQSSQQAEE VLSQGLEQLK QSLIETIATG  240
SVNDGMHHMA VALGKLANLE GLVRQVRILE FKL
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057833.11e-161transcription factor TGA9-like
SwissprotQ93XM61e-126TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A1S4BA751e-155A0A1S4BA75_TOBAC; transcription factor TGA2-like isoform X2
TrEMBLA0A1S4BAH01e-156A0A1S4BAH0_TOBAC; transcription factor TGA2-like isoform X4
TrEMBLA0A1U7W5W51e-155A0A1U7W5W5_NICSY; transcription factor TGA2-like isoform X2
STRINGSolyc11g068370.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-128bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]