PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05774.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 153aa    MW: 17343.2 Da    PI: 8.3763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05774.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-203687256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr +  +g+++AeIrdp+++g  +r +lg+f+tae+Aa+a+++a+ +l+g+
  Sme2.5_05774.1_g00005.1 36 KYRGVRKRT-WGKYAAEIRDPTKQG--ARLWLGTFDTAEDAARAYDKAAFNLRGH 87
                             7*****887.**********98865..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-233695IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-323696IPR001471AP2/ERF domain
CDDcd000184.11E-313695No hitNo description
PROSITE profilePS5103224.0393694IPR001471AP2/ERF domain
PfamPF008473.0E-133687IPR001471AP2/ERF domain
SMARTSM003801.9E-3736100IPR001471AP2/ERF domain
PRINTSPR003675.3E-113748IPR001471AP2/ERF domain
PRINTSPR003675.3E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDGSSSSSPS KGKKVMQEKE NSNKVGKDIN NNEVMKYRGV RKRTWGKYAA EIRDPTKQGA  60
RLWLGTFDTA EDAARAYDKA AFNLRGHLAT LNFPNEYYSK LNDPSYYNYR TSCNTPSNTG  120
HQDKEIIEFE YLDDSVLEEL LGAEEPKMVR KGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-323613614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168164.11e-76PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1B1M33e-75M1B1M3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000349845e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]