PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05640.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 330aa    MW: 36749.8 Da    PI: 7.5919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05640.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-174291255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Sme2.5_05640.1_g00001.1 42 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 91
                             69*******.**********93....35999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-114291IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-214299IPR016177DNA-binding domain
PROSITE profilePS5103222.0894299IPR001471AP2/ERF domain
CDDcd000183.21E-304298No hitNo description
Gene3DG3DSA:3.30.730.101.8E-294298IPR001471AP2/ERF domain
SMARTSM003809.5E-3442105IPR001471AP2/ERF domain
PRINTSPR003671.7E-94354IPR001471AP2/ERF domain
PRINTSPR003671.7E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDAMRLLNQ ESLQNTTNSG KTRCATNKRS LKDNSSGGSS VRYRGVRRRP WGRYAAEIRD  60
PQSKERRWLG TFDTAEEAAC AYDCAARAMR GVKARTNFVY PSPTQTTCTN DAFLGIHGSI  120
KSSSSYYHHQ SCNTLKDLSN KPFFHSSNTP YGRVQKSNDS LNMLLVSSSM NSYPNFMFHR  180
NGFSSYLPTT HSIIPSSSVM TTHLPKFENI MTVSSNSTTT HDSAAGMDFF PSESSDSGLL  240
EEALNGFFPK PIKSEPTLFP QQQQQQQLIN DGLNTEFGFL SETMSSTSSS FPLDYIPGNL  300
QGSPEEHNMM GDIFQYPDLL SIFAAKMQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-194398359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-193798971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552721.11e-142PREDICTED: ethylene-responsive transcription factor ESR1-like
RefseqXP_016557500.11e-142PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A2G2VN091e-141A0A2G2VN09_CAPBA; Ethylene-responsive transcription factor LEP
STRINGSolyc05g013540.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-14DORNROSCHEN-like