PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05639.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 288aa    MW: 32982.9 Da    PI: 4.7999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05639.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09213258555
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +++ r+RR++i ++ +eL +l+P         +++ +e+L+ + +YIk Lq
  Sme2.5_05639.1_g00001.1 213 QSIAARQRRKKITDKTQELGKLIPGgH------RMNTSEMLQATFKYIKFLQ 258
                              67889*******************955......9*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-11205265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-10207260No hitNo description
Gene3DG3DSA:4.10.280.102.4E-11207261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.843208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6213258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-9214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASVSYCSAA KLEPNVQEFD SEEMRIMQEL LFNFNYDVEP NFHENMDQDC YIDSFFNPDE  60
FILPFEMNNN SCFMPEYSVY EKQQDNYLPD SITSLTTHNS YFVSEYSVYE STTKRQKVFH  120
DNFLPNNIIT HTLSFMLGYS VFASTPKQQE DNFLPPPSLG FVPNPPIFQD FASYSLPEIP  180
MPIFSSGCSN NAGVVTRRSG GNNNNNEKKM SAQSIAARQR RKKITDKTQE LGKLIPGGHR  240
MNTSEMLQAT FKYIKFLQAQ AGLLEFMGSY EKDEKSFHTS DLQKLVGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754479e-71HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541148.11e-126PREDICTED: transcription factor bHLH53-like
TrEMBLA0A2G3DDP61e-125A0A2G3DDP6_CAPCH; Transcription factor bHLH87
STRINGPGSC0003DMT4000536511e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-16bHLH family protein