PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05447.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 207aa    MW: 23938.7 Da    PI: 8.8256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05447.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-111411811055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sme2.5_05447.1_g00007.1 141 RKRRERINERLRILQSLVPSG-----TKVDLSTMLEEAVHYVKFLQ 181
                              9*******************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14132197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-11137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-10140185No hitNo description
PfamPF000105.9E-8141181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MMGYKNLENS SYNQDYSHDD YVMKEDFGNN YSQLDNEMLL KRKFDEVQLV VEEKKFKDFE  60
NPKKKSKVSR DHVPKTKKNN QTKADKNQKN IQMNNEEVGD KETNNNGQST SSCSSEDDSN  120
LKTKTRASRG AATDPQSLYA RKRRERINER LRILQSLVPS GTKVDLSTML EEAVHYVKFL  180
QTQIKLLSSD DMWMYAPIAY NGTGIDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-67HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342725.11e-123PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK05e-52BH085_ARATH; Transcription factor bHLH85
TrEMBLM1ATU11e-103M1ATU1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000301651e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-38ROOT HAIR DEFECTIVE 6-LIKE 2