PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05446.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 159aa    MW: 18744.5 Da    PI: 5.1728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05446.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.81.2e-157109109209
                     GRAS 109 e.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl.edl 189
                              + +++Hi+D+d++ G+QWp++++a+ ++      l+ T + + e++   ++ + ee+++rL ++A+ +g++++ + +++++l ++l
  Sme2.5_05446.1_g00006.1   7 DvQTIHIVDYDMGRGIQWPPIIEAMGQKG---KALKFTSIRKTEEEstgDQWRFEEMKKRLVDYANPFGLTLQVEEMTVEELaSEL 89 
                              4489**********************974...4699999998777677899************************99665441455 PP

                     GRAS 190 eleeLrvkpgEalaVnlvlq 209
                              +  + r k+ E l+ n+   
  Sme2.5_05446.1_g00006.1  90 TRMKKRGKKSEFLVFNWLQG 109
                              55555666699999999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.0631159IPR005202Transcription factor GRAS
PfamPF035144.3E-137109IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEAIPDDVQT IHIVDYDMGR GIQWPPIIEA MGQKGKALKF TSIRKTEEES TGDQWRFEEM  60
KKRLVDYANP FGLTLQVEEM TVEELASELT RMKKRGKKSE FLVFNWLQGM RVSKENLLQA  120
KEVVNERETP FRVRIEEERQ YEIVLEWKGT SLARVSTWM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754489e-48HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169942.13e-53PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM1CJ597e-52M1CJ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000685071e-52(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-07GRAS family protein