PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05426.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 336aa    MW: 37449.3 Da    PI: 7.3253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05426.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12109160155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+ ++   + ++ + a+i+  A+e++k+L+
  Sme2.5_05426.1_g00001.1 109 QRMTHIAVERNRRKQMNEHLSVLRSLMSES---YVQRGDQASIVGGAIEFVKELE 160
                              79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-12107162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-12107164No hitNo description
SuperFamilySSF474591.83E-15107176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.646108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALEALSTNE LLNFIMYDTI STTTTNNLDE NALFFDHHDD KNNNTYLLKS QDFGTAPLEQ  60
QYSTTASVSP SKTSKKHNLT MATQGGGGGR KKRRRRPKIC KNKEEAENQR MTHIAVERNR  120
RKQMNEHLSV LRSLMSESYV QRGDQASIVG GAIEFVKELE HILQSLEAKK FILLQQGHNI  180
GSDSNSGGNG CDSEVLNSTT GEALASVPAE YFPTPFAQFF SYPQYTCCQL PNKYTSKSKA  240
AIADIEVTLI ETHANVRILS RRRFRQLSKL VVAFQSLYLT VLHLNVTTLD PLVLYSISAK  300
VEEGCQLNSA DDIAGAVHHM LRIIEEEAVA TLSCQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995RKKRRRR
29095KKRRRR
3109120RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612331e-152GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352865.11e-172PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T42e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLM1BHA51e-170M1BHA5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000452101e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]