PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05369.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 291aa    MW: 31040.4 Da    PI: 5.2312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05369.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10173220455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Sme2.5_05369.1_g00003.1 173 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 220
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-16167228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-9167224No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16169235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-11175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVQMDPPIVN EGSFSAANPS SYSLAEIWPF AAAANAGGNG ELGGGGLGLR MSSFTGLLEA  60
AANSINESTL TEQNGRNAGG AADGGGNVGL RKRDMNSEDD LSKFVSTSDA SDLDGSVAKR  120
LKASQSKEEN GASKVEAESS SQTANKGTEQ SSKPEPPKDY IHVRARRGQA TDSHSLAERA  180
RREKISERMK ILQDLVPGCN KVIGKALVLD EIINYIQSLQ RQVEVFLSMK LEAVNSRMNH  240
PIETFPSKDL APSAFDTSGM IFGAQAPREY AQGAQSEWLH MQVGSSFDRA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754425e-88HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563548.11e-179PREDICTED: transcription factor bHLH79
SwissprotQ9LV171e-81BH079_ARATH; Transcription factor bHLH79
TrEMBLM1C9L81e-178M1C9L8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628441e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.14e-80bHLH family protein