PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05213.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 216aa    MW: 24359.2 Da    PI: 5.2032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05213.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.2e-1582133256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                              ++ GVr++  +g + AeIrdp   + + +r +lg++  +e+Aa a+++a+ k++g+
  Sme2.5_05213.1_g00003.1  82 RFIGVRRRQ-WGTFSAEIRDP---NrRGARLWLGTYEAPEDAALAYDQAAYKIRGA 133
                              578***887.**********9...4334*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.30E-2582142No hitNo description
SMARTSM003802.5E-2682146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2882141IPR001471AP2/ERF domain
PROSITE profilePS5103221.61482140IPR001471AP2/ERF domain
PfamPF008479.6E-1082132IPR001471AP2/ERF domain
PRINTSPR003674.4E-108394IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2083141IPR016177DNA-binding domain
PRINTSPR003674.4E-10122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNIPYDDDDT FSLPSLDSFE SISHLLYEDF DFSPSISSDN TLLLPDTPSS NSAESSAGCE  60
PPEETKEPTV ARKENAPQDW RRFIGVRRRQ WGTFSAEIRD PNRRGARLWL GTYEAPEDAA  120
LAYDQAAYKI RGAKARLNFP DLIGADVPMP PRVTARRRTR SRSRSHSPEP EPEVEPEPST  180
TSSSENGTRK RKIDMINSIA KAKLICGWKL EMLIQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2181140463ATERF1
3gcc_A1e-2181140463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229751.12e-91ethylene-responsive transcription factor 1
SwissprotQ404765e-31ERF1_TOBAC; Ethylene-responsive transcription factor 1
SwissprotQ8L9K14e-31ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0V0HG411e-94A0A0V0HG41_SOLCH; Putative ethylene-responsive transcription factor 1-like
STRINGSolyc01g090340.2.16e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-31ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]