PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05169.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 644aa    MW: 71610.2 Da    PI: 7.9753
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05169.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1062.1e-33357411155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sme2.5_05169.1_g00001.1 357 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVHGLTIYHVKSHLQKYRL 411
                              79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059703.8E-343102IPR010285DNA helicase Pif1-like
SuperFamilySSF525403.72E-1548236IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF059709.2E-27108219IPR010285DNA helicase Pif1-like
PROSITE profilePS5129415.115354414IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-32356412IPR009057Homeodomain-like
SuperFamilySSF466892.51E-17356411IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25357412IPR006447Myb domain, plants
PfamPF002493.4E-9359410IPR001005SANT/Myb domain
PfamPF143798.0E-23444490IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0003678Molecular FunctionDNA helicase activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MTNMSKQSGA AKLIRKAKVI IWDEAPMARR QTIETIDRSF RDIMDSEKPF GGEVMVFGGD  60
FRQVLPVVPR LMRAETVDSS LVKSYLWPSM EKIQLTRNMR ARIDLAFKES FIGEIFTGLQ  120
QNATTAKYVI ERAILASRND HVDNLNDKLI AMFPGESNTF NSFDSAEDDT NNYYQEEYLN  180
TLTSNALPPL ELKTNAPIML LRNLDPSNGL CNGTRMICKD FHRNVIHVEI SSGHYAINQV  240
FILRIQLSPL ENEGYPFKFI RKQFSISEME IGVAVGGAFL SSPLNILFDR VAPEDRLLKA  300
NLLLKTLSAW WQRRPSSSLV HKNILVTYSQ ILCCGGSTMD PTNGANNLNN NPSLASKQRL  360
RWTHELHERF VDAVAQLGGP DRATPKGVLR VMGVHGLTIY HVKSHLQKYR LAKYLPDSSS  420
DGKQSDKKES GDMLSSLDGS STGVQINEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY  480
LKKIIEEQQR LSGVLSEVPV PGVTPSVAGD NGLDSDNRTD PGTPAPTSES PHIDTSVQEH  540
VRSKSLSIDQ SFSSQHEPLT PDSGCRETSP INSSEGERSS KKQRVGTSAI STKADMLLPH  600
KILESSFSSP YQQPNPVFLG NNQFNLSSGL SLGNEGPKVS GSNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23357414158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23357414158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23357414158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23357414158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23357414259Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1928800.0AB192880.1 Solanum tuberosum PPS4 mRNA for MYB-CC type transfactor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768901.10.0myb family transcription factor PHL7-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-84G2-like family protein