PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05101.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 190aa    MW: 20841.1 Da    PI: 8.1149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05101.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.9e-07127153430
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                              +h+ +Er RR++i +++  L++l+P +
  Sme2.5_05101.1_g00002.1 127 SHSLAERARREKISERMKILQDLVPGC 153
                              8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-8121155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-5121156No hitNo description
PROSITE profilePS5088810.633123190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-8126155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4127153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDPESTIVSA FQAAPNLAEI WPFPINALSS DNQDQHIPIN HHLQHIKNHA ARKRRDDDES  60
AKGVSTSGNA LNESDNKRLK ATRSNENQEY SGGGNSGKST DQPAKPSAEP PKDYIHVRAR  120
RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKSCPNL FVEMIGLSFT SKACPPGPPF  180
QSESNVGFLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776015.11e-71PREDICTED: transcription factor bHLH79 isoform X4
SwissprotQ0JXE72e-33BPE_ARATH; Transcription factor BPE
TrEMBLK4BNB92e-68K4BNB9_SOLLC; Uncharacterized protein
STRINGSolyc04g005130.2.15e-68(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-35BIG PETAL P