PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05033.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 183aa    MW: 21416.5 Da    PI: 7.1468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05033.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-061031691654
                              HHHHHHHHHCTSCCC...............................TTS-STCHHHHHHHHHHHHHH CS
                      HLH  16 iNsafeeLrellPkas............................kapskKlsKaeiLekAveYIksL 54 
                              iN a ++L++l P++s                             ++++K +K+ iL++  +YI+ L
  Sme2.5_05033.1_g00003.1 103 INLAKQKLKRLAPTLStwsrrelgdiyanvkdfeertrvakeefITNNTKENKIKILTLNAQYIRFL 169
                              89999*********888************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-4103117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4149180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEDRDEDDEI REHLIKVFSP SWDNASEEEI HHITHNEVIL SRGDFNMISS IKEKLGGFLY  60
NMKKSFEFIS ITEACGLTNL GYKKCDHVQD TPLFEVKAIV KVINLAKQKL KRLAPTLSTW  120
SRRELGDIYA NVKDFEERTR VAKEEFITNN TKENKIKILT LNAQYIRFLK LEDSMLRQKA  180
QLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160415.14e-33PREDICTED: uncharacterized protein LOC107058780
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA338