PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04963.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 265aa    MW: 29936.4 Da    PI: 6.6788
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04963.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.76.3e-19216265151
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                              k r+ Wt +LH++F+++ve+L G+ k  Pk+ile+m+v+++t+ +v+SHLQ
  Sme2.5_04963.1_g00004.1 216 KSRILWTDDLHAKFMKVVEHL-GEGKCFPKQILEIMEVPDITRLQVASHLQ 265
                              689******************.9***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.55E-14214265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-18215265IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-18216265IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTTPYQATTQ DAGVVLIHHG SEFVAKMVDL LKCYEHKVMA VGMTSTFMTM LSNENEKIDA  60
IMISRHSLDF SSLRLLGQAV TSKIISLAIC DEHNEQHSVL KSLNIGTYIV VEKPLDEKIV  120
DDLSQFVLRK KIKKEKAVEG LEENGVEKNV DDNGNNNIIG NTEEQDGKKN NVPKIEEQSN  180
NIHEVENVVV SNEKCKQRTK RGMKNMKVVN ENIGKKSRIL WTDDLHAKFM KVVEHLGEGK  240
CFPKQILEIM EVPDITRLQV ASHLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27070.12e-14response regulator 13