PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04864.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 92aa    MW: 10263.6 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04864.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-0620591454
                             HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             d+i +  ++L+ l+ +     +s K s + +L+++++YI+sL
  Sme2.5_04864.1_g00002.1 20 DQIADLVSKLQLLIESrT--RRSDKGSASKVLQETCNYIRSL 59
                             67889999********54..7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-62074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-62077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRGSR QSGPSIITDD QIADLVSKLQ LLIESRTRRS DKGSASKVLQ ETCNYIRSLH  60
REVEDLSDRL SVLLESTESD SAQAAIIRSL LM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344270.11e-44PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX12e-32PRE5_ARATH; Transcription factor PRE5
SwissprotQ8GW322e-32PRE6_ARATH; Transcription factor PRE6
TrEMBLM0ZSZ31e-44M0ZSZ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000074303e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-33bHLH family protein