PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04806.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 294aa    MW: 33400.8 Da    PI: 8.6741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04806.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.22e-33591991128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+P+d e++ e+L++kv +++++++        +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r++
  Sme2.5_04806.1_g00001.1  59 LPAGVKFDPSDGEIL-EHLEAKVLSDTHKIHPliddfilTIDGQnGICYTHPQRLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKV 142
                              799***********9.99*****99995553344444433665546**********.566677888******************74 PP

                      NAM  79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +      + +W++tgk+++v+  ++ l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Sme2.5_04806.1_g00001.1 143 HteidggETRWHKTGKTRPVYI-NEVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 199
                              4446655778************.999***********66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-3754218IPR003441NAC domain
PROSITE profilePS5100532.27259218IPR003441NAC domain
PfamPF023654.2E-1460199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTWCSESTGL PIITSSSSPD QENNVVMITS KTRFITCPSC GHSIQLQHQR GILDDLPGLP  60
AGVKFDPSDG EILEHLEAKV LSDTHKIHPL IDDFILTIDG QNGICYTHPQ RLPGVSKDGQ  120
VRHFFHRPSK AYTTGTRKRR KVHTEIDGGE TRWHKTGKTR PVYINEVLKG YKKILVLYTN  180
YGRQRKPEKT NWVMHQYHLG ENEEEKDGEL VVSKVFYQTQ PRQCGSLSIK KPIDNNINPV  240
VKTTTNFVDY YNPNPFITYN VESQSSPHQQ LIQNLVVHGD TSSFIIPSHP SKDK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364309.10.0PREDICTED: NAC domain-containing protein 73
RefseqXP_015159378.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-111NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM1D4E90.0M1D4E9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000812290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-114NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]