PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04783.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 317aa    MW: 36268.2 Da    PI: 6.1166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04783.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.2e-05103129430
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                              ah+ +Er RR++i +++  L++l+P +
  Sme2.5_04783.1_g00003.1 103 AHSLAERVRREKIGERMKFLQDLVPGC 129
                              8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-797131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-497132No hitNo description
Gene3DG3DSA:4.10.280.105.1E-799131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSTKECEFGD SRENSSVSEQ IPIEEIGIKC QNVINSNKGK SISKRKAKEI TSKNDNVSTQ  60
NNESSSKRVK YDDKEKNEEN QKPQEPPKDY IHVRARRGQA TDAHSLAERV RREKIGERMK  120
FLQDLVPGCN KSFQEFVNWL VGNIFTNNNN NIPNGIPEVS SREGEMYTDL TNEPDSNRMF  180
FLSMKLSNLN PTTDFNAESL ASKNTRVFQK QHFYLYEIVV FQSRGSLHHN MNSSESSVQV  240
FPYGFQSQQE PNLQSFLPTE TEFPFKINPH LDGFVEQTPQ VSTFFEDDLH SFVHMGFGQI  300
QAQNFPGNVS TTPMKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-67HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060719.11e-141transcription factor bHLH62-like
TrEMBLM0ZZX31e-138M0ZZX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000116511e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-34bHLH family protein