PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04775.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 182aa    MW: 19657.5 Da    PI: 10.7044
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04775.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.8e-191852135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Sme2.5_04775.1_g00008.1 18 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 52
                             ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-141262IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4921248IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-121352No hitNo description
Gene3DG3DSA:3.30.50.107.2E-151751IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.48E-111752No hitNo description
PROSITE patternPS0034401843IPR000679Zinc finger, GATA-type
PfamPF003207.3E-171852IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSEATSPET SQSNVKTCAD CGTTKTPLWR GGPAGPKSLC NACGIKSRKK RRAFLGLNNE  60
DKKSKKSAAL GHKSTGLQNH LNQSCSSSSN SEDSKNSNFV KNIVSSSLKK KLLPFGKEVV  120
LQRPRSRSTQ KKKLGEVEQA AFLLMALSCG SFYTQTGMKM GKDRKNEKCC TLGSKSSTLW  180
VG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-136HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345972.11e-104PREDICTED: GATA transcription factor 15-like isoform X1
RefseqXP_006345973.11e-104PREDICTED: GATA transcription factor 15-like isoform X2
RefseqXP_006345974.11e-104PREDICTED: GATA transcription factor 17-like isoform X3
RefseqXP_006345975.11e-104PREDICTED: GATA transcription factor 17-like isoform X4
TrEMBLA0A0V0HK931e-106A0A0V0HK93_SOLCH; Putative GATA transcription factor 17-like
STRINGPGSC0003DMT4000602411e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-33GATA transcription factor 15