PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04475.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 167aa    MW: 18509.5 Da    PI: 6.9736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04475.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-2095145255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp   + k++r +lg++ t+e+Aa a+++a+ k++g
  Sme2.5_04475.1_g00002.1  95 RYRGVRRRP-WGKFAAEIRDP---NkKNARLWLGTYETPEDAALAYDQAAFKIRG 145
                              8********.**********9...5467*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-3294155No hitNo description
SMARTSM003808.3E-3995159IPR001471AP2/ERF domain
PfamPF008475.4E-1595145IPR001471AP2/ERF domain
PROSITE profilePS5103224.60595153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3295154IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2395154IPR016177DNA-binding domain
PRINTSPR003671.4E-1396107IPR001471AP2/ERF domain
PRINTSPR003671.4E-13135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNPADFSLLQ SIQHHLLNDS DIPVIFSTID SNNSPTSSFS NSANSIESNF YYGELAPLIN  60
PSTSTLEAST EKSEVEESKD TVAANVTHAS QDWKRYRGVR RRPWGKFAAE IRDPNKKNAR  120
LWLGTYETPE DAALAYDQAA FKIRGSKARL NFPHLVGSGV PKPPRDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3094159469ATERF1
3gcc_A4e-3094159469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-102HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544944.11e-90PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1U8EM383e-89A0A1U8EM38_CAPAN; ethylene-responsive transcription factor 13-like
STRINGPGSC0003DMT4000914742e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-37ethylene-responsive element binding factor 13