PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04397.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 187aa    MW: 21797.7 Da    PI: 9.7317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04397.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM713.2e-2281372128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              p+G+rFhPt+ e++ +yL   +++++l+ ++  ++ vd+y   ePw++ +   ++++  yf ++++k+++  kr +r++ +g+Wk 
  Sme2.5_04397.1_g00005.1   8 PMGYRFHPTNTEVL-KYLLGFARDEPLPNQNElMQLVDLYADkEPWQIFE--GSNTNTSYFITPQKKQNPGWKRFSRSVGEGTWKP 90 
                              89**********99.99*********77766559999*997559****63..3455688***********9*************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                              +gk k+ +++kg+l+g  k+L +     k+++ k  + +W+m ey+l
  Sme2.5_04397.1_g00005.1  91 QGKGKDTFDNKGRLMGYVKSLKYIpntdKKSQIKYANGEWLMTEYSL 137
                              ************************76554555566699*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-255160IPR003441NAC domain
PROSITE profilePS5100526.4567160IPR003441NAC domain
PfamPF023653.1E-138137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAQPNRRPMG YRFHPTNTEV LKYLLGFARD EPLPNQNELM QLVDLYADKE PWQIFEGSNT  60
NTSYFITPQK KQNPGWKRFS RSVGEGTWKP QGKGKDTFDN KGRLMGYVKS LKYIPNTDKK  120
SQIKYANGEW LMTEYSLYDG YLDAREIKNK GYVICKIKKK EKRAAKDDNK GVSEEDMTEV  180
EQFINSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348969.16e-89PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6JUZ19e-82A0A1J6JUZ1_NICAT; Nac domain-containing protein 43
STRINGXP_009762991.13e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.18e-13NAC domain containing protein 84