PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04394.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 278aa    MW: 30519.3 Da    PI: 10.374
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04394.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.31.1e-20174236163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++l+ e ++l +++
  Sme2.5_04394.1_g00005.1 174 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRAELSRLRSEHDQLSAQN 236
                              89********************************************************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165962.3E-2064141No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-18167235No hitNo description
SMARTSM003385.6E-21174238IPR004827Basic-leucine zipper domain
PfamPF001704.9E-19174236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403176239IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-11177233No hitNo description
CDDcd147022.12E-20179230No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVGEVDNTKE IAQVLNYKVG TVFTTYMELP LGTSDFLVRN AVIKGVKKQL VGWKKRLLVK  60
WLKESPMKSA GRQDSAEEAS QNGNSAHSSQ NGGTSAPHSL VNQAMAIMPM SAVGAGSVPG  120
PTTNLNIGMD YWNATASQSI PAIHGKVPSA PVAGGMVTAG SRDIVQSQMW IQDERELKRQ  180
RRKQSNRESA RRSRLRKQAE CDELAQRAEV LKEENASLRA ELSRLRSEHD QLSAQNASLK  240
ERLGEVPGRD DPRPSRNDRP LNKDTQHSSQ TEPKQGGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196RRSRLRK
2190197RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139800.0BT013980.1 Lycopersicon esculentum clone 133025R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166618.11e-142PREDICTED: transcription factor HBP-1a isoform X2
SwissprotQ501B25e-65BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0V0IFE11e-141A0A0V0IFE1_SOLCH; Putative transcription factor HBP-1a-like
STRINGSolyc08g076100.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.17e-68basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]