PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04359.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 123aa    MW: 14298.9 Da    PI: 6.2744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04359.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-164695255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L ++++Y+++Lq
  Sme2.5_04359.1_g00004.1 46 RSKHSVTEQRRRSKINERFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 95
                             899*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1942117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-2343119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.844494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.40E-144699No hitNo description
SMARTSM003531.4E-1150100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MQAMKGHQEE EEEEEDEIGV KKDVTPSSSN TKVTDGKNND KASAIRSKHS VTEQRRRSKI  60
NERFQILRDL IPHTDQKRDT ASFLLEVIQY VQYLQEKVQK YEGTYQPWSS EPTKLMPWVN  120
SSG
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068770.12e-66transcription factor BIM2-like isoform X1
RefseqXP_019068771.11e-66transcription factor BIM2-like isoform X3
SwissprotQ9CAA47e-51BIM2_ARATH; Transcription factor BIM2
TrEMBLM1BQJ55e-65M1BQJ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000505728e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-49BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]