PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04102.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 358aa    MW: 39185 Da    PI: 6.8318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04102.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.6e-062412801054
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sme2.5_04102.1_g00014.1 241 KARKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 280
                              77889999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.788231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-4235286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11241297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-9241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-6243284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAEEFQLGGG NWWENNTSTS SKNRFDSGSS GTPTTSTSSA TTTNYSSNWP TQTDHVEDIK  60
SRTFLDSVSV SQSSGHDHGG GGGGGGEGGG GVLSSHDPNF QIMGLGLTSH QPHEWNQPSL  120
WNYGDSSSQM NIRAFSLDQN NPILSHSSNY QVVDNHQVLH SSTINSCSKF PQFLRSPSSS  180
EQPPPAPPLP PPHNQLHFSN NTPFWNASAS TMNDVPSSLF PSNLHNIPQL HNNTIVDEKP  240
KARKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL HDQIGALSAP YMKSGASMHH  300
QKDWGTWVKV LEVFLEKVSP LCRAYSSAVR HDVANMPSRI HQSTSPCRPE RHPESRQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331224e-92AC233122.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence.
GenBankAC2401924e-92AC240192.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence.
GenBankAC2402244e-92AC240224.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence.
GenBankHG9755224e-92HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362967.21e-145PREDICTED: transcription factor bHLH123-like isoform X2
TrEMBLM1CCA81e-136M1CCA8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000643991e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.17e-29bHLH family protein