PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04079.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 303aa    MW: 32063.1 Da    PI: 5.9703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04079.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09151195554
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Sme2.5_04079.1_g00005.1 151 HSIAERLRRERIAERIRALQELVPSvN------KTDRAIMLDEIVDYVKFL 195
                              99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-15144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.91146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6151195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNPSEGPS DDFFDQILGF PAYNGAEPNL AGNDAGAIPP AMMLQLNSGD GSGQFSGVGL  60
GVGLGGGGGF HGHGGAASFP LGLSLEQGKG GFLKMDDGSA PGRRFRDDVV DSRASSSVKP  120
GFHGQPMPSM PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD  180
RAIMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PISSVEEESS EGGNNNQPAW  240
EKWSSDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYHSQPPD TSSLVKPETN  300
PPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142101e-152AC214210.1 Solanum lycopersicum chromosome 9 clone C09HBa0135N15, complete sequence.
GenBankHG9754481e-152HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-152HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349737.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-125UNE12_ARATH; Transcription factor UNE12
TrEMBLM1BPA81e-180M1BPA8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]