PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04004.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 232aa    MW: 25661.4 Da    PI: 9.4008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04004.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-132571354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             ++h+e+ErrRR+riN  +++Lr llP+       K +Ka+ L +Av+++++L
  Sme2.5_04004.1_g00006.1 25 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 71
                             79*************************8.....6**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3072271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-102573No hitNo description
Gene3DG3DSA:4.10.280.107.4E-142581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-102571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-142681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-122877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.01E-5131197No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-6131183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MFNNVESSSV SPRSMAEAKA IAANKSHSEA ERRRRKRING HLATLRNLLP NTIKTDKASL  60
LAEAVRCVRE LKQTTSELGA STTMSDDDDH TTLMTKLMFP SESDELNISY CNSNSNSNNN  120
STDSNSVIKA SMCCEDRPDI MMELRRALST VQGKIVRAEM STVGGRIKCV LWLQLSENGC  180
KEGLLVQLRR ALKVVMDKAN FGPQNMGQDL LGNKRPRLLG GPMNYVCKNG HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-135HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346749.21e-142PREDICTED: transcription factor bHLH30-like
TrEMBLA0A3Q7G1551e-133A0A3Q7G155_SOLLC; Uncharacterized protein
TrEMBLM1C6621e-133M1C662_SOLTU; Uncharacterized protein
STRINGSolyc04g014360.2.11e-133(Solanum lycopersicum)
STRINGPGSC0003DMT4000606151e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-34bHLH family protein