PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03973.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 276aa    MW: 31556.7 Da    PI: 9.7548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03973.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08114161554
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 +Er+RR+++ + +++Lr l+P+       +K   ++ L++ v+Y+k+L
  Sme2.5_03973.1_g00006.1 114 RRDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRAISDHLKEIVDYVKDL 161
                              5689*********************77...999****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-9109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.566109161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-6113178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5114161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDDSEFDFSQ LDQLFDFLSS PPPPPPTTLQ NQDSSISFQT QNSNLLTTST HHVPKMKPII  60
TNHVIKNKPI LTTNIDIVDD QVQGSPKEKR PRLLRKAAVE NFPEMVVDKK KVLRRDVERQ  120
RRRDMAKLYQ RLRLLIPSKY LMGKRAISDH LKEIVDYVKD LRKNIEDLEI KKEKLKEMAN  180
NICSSQLTPC STSMKIIDDD EDRIIVKSCN DGVEISIKGG ISLSKVLKVL MKEGLNVNSC  240
VSSTVDQRLI HIIQSKVNTR GDIDLSMLRS KLMSLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754465e-94HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164607.11e-116PREDICTED: transcription factor bHLH120-like
TrEMBLM1DM761e-114M1DM76_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912641e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128311118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.17e-19bHLH family protein