PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03973.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 283aa    MW: 32441 Da    PI: 6.2604
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03973.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-1073123254
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              ++  + +Er+RR+++ + +++Lr l+P+       +K s ++ Le+ v+Y+k+L
  Sme2.5_03973.1_g00005.1  73 KTVRKDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYVKDL 123
                              677889**********************77...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-1070139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.05571123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-773141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-873123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.32E-876128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDGFEFDFSQ LDQLFDILSP PINTFENQDP SIISSQTQTQ TSNDENKSII TITSTLIDDD  60
QIQDPPKEKE KKKTVRKDVE RQRRRDMAKL YQRLRLLIPS KYLMGKRSIS DHLEEIVDYV  120
KDLRKNIEDL ERKREILKEM KNNICNSQLT PCSSSDNDDR ITVKSCNDGV EISIKGGLSL  180
SKVLKVLMKE GLNVNSCVSS TVDQSLHHII QSKGLIIHIL VIPSAETDDF ASVFSCLEWA  240
TQLASMRHED SPDPLPPNSL VSNRQLNWLL HVMRMVRAQY LPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-35HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164649.12e-76PREDICTED: transcription factor bHLH120-like isoform X1
TrEMBLM1AAC22e-76M1AAC2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000182745e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128311118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.12e-16bHLH family protein