PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03969.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 446aa    MW: 49594.9 Da    PI: 7.3604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03969.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.6e-32242297156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sme2.5_03969.1_g00004.1 242 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 297
                              68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.22239299IPR017930Myb domain
SuperFamilySSF466897.17E-17240300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28240300IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26242297IPR006447Myb domain, plants
PfamPF002497.7E-7244295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNMASSNSEL SLECKPHQSY SMLLKSFGEK NIDQAQNLEE FLARLEEERV KIDAFKRELP  60
LCMQLLTNAM EASRQQLQSH RENNHIGHRP VLEEFIPLKN NNASAELGTE KIVANNTSTI  120
VDNKANWMTS AQLWSPPSDH QETKQQTTSN KENDHHHMAF SVGPKLALDN NNSSCPSSTT  180
LALASSNKQN INETLIRVED HNNKNLEVVN INNLQQDAQG IGGGTNNTST SSQQQQQQPH  240
RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR  300
PSPSPQATTA PPHLVVLGGI WVPPEYAAAA AHGGAPPTAT FYGPHATSHA PSPHYIAAPQ  360
AVAQEFYSTP QPLQSLHHLQ HHQPLYHHGS HMYKSSSKSH SHSSPDSNTR ETGQQGDRSL  420
ESIEDEKSES CSSENGGDRK VVVHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13242295255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-180HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350899.10.0PREDICTED: transcription factor LUX
SwissprotQ9ZQ851e-99EFM_ARATH; Myb family transcription factor EFM
TrEMBLM1CZG30.0M1CZG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000781360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.19e-79G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]