PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03935.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 203aa    MW: 22126.1 Da    PI: 10.5852
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03935.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-192962134
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                             Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Sme2.5_03935.1_g00001.1 29 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 62
                             *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-172377IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-132662No hitNo description
Gene3DG3DSA:3.30.50.105.9E-162762IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.5322759IPR000679Zinc finger, GATA-type
CDDcd002021.53E-132860No hitNo description
PfamPF003203.4E-172962IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKNLKLEDQK QHVETDQSSN NNIIPIRVCS DCNTTKTPLW RSGPKGPKSL CNACGIRQRK  60
ARRAAAAAAA ATNNGTNFNS TEASTTTTTM KIKVQQHKHK ITKVNTNHVV PFKKRCKFLS  120
TTPAPAPAPA PVPTPTPRVG SSSSSSSSYN NNNNNDVEQK KKLCFEDFFV NLSNNLAIHR  180
VFPQDEKEAA ILLMALSSGL VHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-130HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251667.12e-88PREDICTED: putative GATA transcription factor 22
SwissprotQ9SZI65e-32GAT22_ARATH; Putative GATA transcription factor 22
TrEMBLK4DBX16e-89K4DBX1_SOLLC; Uncharacterized protein
STRINGSolyc12g008830.1.12e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-21cytokinin-responsive gata factor 1