PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03842.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 309aa    MW: 35716 Da    PI: 8.7072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03842.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.6e-18113162255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a++  + +l+g
  Sme2.5_03842.1_g00003.1 113 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDSAEEAAFAYDVEAFRLRG 162
                              8*******9.**********954...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-34112172No hitNo description
SuperFamilySSF541712.48E-22113171IPR016177DNA-binding domain
SMARTSM003805.7E-39113176IPR001471AP2/ERF domain
PROSITE profilePS5103223.67113170IPR001471AP2/ERF domain
PfamPF008473.5E-11113162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-31113171IPR001471AP2/ERF domain
PRINTSPR003671.9E-10114125IPR001471AP2/ERF domain
PRINTSPR003671.9E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSTYRPMKKR KISPSSQHNN LRSSGDGVGH VAQRIRARDY ESQFCNTPRN SKFRFPFALD  60
DIPLTSNCQS LAQNQTMISF ASQNSFNQCR GIDNGTMMTK NVYGTVSSPV PKRYRGVRQR  120
HWGKWVAEIR LPRKRTRLWL GTFDSAEEAA FAYDVEAFRL RGTDARLNFP HLFLEDREPS  180
CNNIDEDLSA ASSTTSFAKN RSQIQHKQKD NEVPSPAEQS TSVLDKEIRM QDKIAYNRSL  240
WFEPFPDPTR NESLVHQNAQ IMMFDGSNFH ESMPKYNTEV IQQEQQCDFI ITDPGFRDDL  300
FSFPFKVLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19112170160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19112170463ATERF1
3gcc_A2e-19112170463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355177.11e-141ethylene response factor H.13
TrEMBLM1B8H71e-141M1B8H7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000395761e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-33ERF family protein