PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03826.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 330aa    MW: 36482.1 Da    PI: 4.8981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03826.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-154695255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             r +h+  E+rRR++iN++f+ Lr l+P+     ++K + a+ L+++++Y+++Lq
  Sme2.5_03826.1_g00003.1 46 RSKHSVTEQRRRSKINERFQMLRNLIPNT----DQKRDTASFLTEVIQYVQYLQ 95
                             899*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-1942115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-2342116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0254494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-154699No hitNo description
PfamPF000101.1E-124695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1250100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKSGKGHLGE EEEDEYDFGS NRDATPSSNS TKVMDGKKID KANAIRSKHS VTEQRRRSKI  60
NERFQMLRNL IPNTDQKRDT ASFLTEVIQY VQYLQETVQK YEGSYQSWSS EPAKLMSWRN  120
SHWHAQNFPA NPQDLKNGTD SGPTYSGRFD ENLLPITSSM QANQRNPLES HPGGDVSGKP  180
MDQEKELANR AIGTSTPLQA SMPAPFQNDS AFSDSLRTPA SDECLSTANA LNDQGFVIEG  240
GTISISNVYS QGLLNSLTQA LQTTGLDLSQ ANISVQINLG KQQANKEMAL GPSVAKDTEN  300
PPPAGDQFME EFRATNNDEE LDQAQKTLKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-103HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076811.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-87BIM2_ARATH; Transcription factor BIM2
TrEMBLM1BQJ50.0M1BQJ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000505720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-89BES1-interacting Myc-like protein 2