PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03810.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 493aa    MW: 54946.6 Da    PI: 8.2713
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03810.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-09219256643
                              HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                                rr+++NReAA++sR RKka++++Le+    L++  +
  Sme2.5_03810.1_g00007.1 219 TLRRLAQNREAAKKSRIRKKAYVQQLETSRIRLSQLEQ 256
                              579************************86655555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0026214291IPR004827Basic-leucine zipper domain
PfamPF077163.8E-7218260IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-7218258No hitNo description
SuperFamilySSF579591.38E-6219260No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
PfamPF141442.7E-32299373IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MASQGIRETG LTDSGPSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG SGFDFGELEE  60
AFVLQGFKMS NDEAKASLYA EAATGKPAAT LEMFPSWPMR FQQTPRENSK SREESTDSGS  120
LSSRAQPHFE PESPISRKAS SDHQLQITHK SQEQQQLQDM ASNSNNNPRT GVLQTELSSK  180
SNSEKKKGAA STSERVLDPK PMRVGFAKSN IFSVNPTQTL RRLAQNREAA KKSRIRKKAY  240
VQQLETSRIR LSQLEQELQR ASSQGIFFGG GTAAGSNISS GAAVFDMEYS RWLDDDQRHM  300
SELRTALQAH LSDGDLRLIV DGYIAHYNEI FNLKGVAAKS DVFHLITGMW TTPAERCFLW  360
MGGFRPSELI KMLIGQLDPL TEQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTIATA  420
SLHDGMHHMA LALGKLSNLE GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL  480
RALSSLWLSR PRE
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6933870.0KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080261.10.0transcription factor TGA9 isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A3Q7H0D90.0A0A3Q7H0D9_SOLLC; Uncharacterized protein
STRINGSolyc06g074320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-162bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]