PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03682.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 317aa    MW: 34078.9 Da    PI: 8.044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03682.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-212776255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g
  Sme2.5_03682.1_g00007.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRG 76
                             6********.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-192784No hitNo description
SuperFamilySSF541711.83E-222785IPR016177DNA-binding domain
SMARTSM003801.7E-402790IPR001471AP2/ERF domain
PfamPF008471.8E-142776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-322784IPR001471AP2/ERF domain
PROSITE profilePS5103224.1972784IPR001471AP2/ERF domain
PRINTSPR003674.0E-112839IPR001471AP2/ERF domain
PRINTSPR003674.0E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAMKEKVNGV SKGVNVNSDG VKNKEVHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAAKAYDAA AREFRGPKAK TNFPFPSENQ NPTDSGSPGE SSSGETGVHA PLEMDLTRRL  120
EGGDNGGGYG FQIFQHQPAM AAPSSNRSSP AESTTAENIV HPPLELNLTR HLEGGHNDGR  180
SAESGLLRNG FPIFHAESSS GGSTGANPPL ELDLTRRLGT VGELTDHVRN GFPIFHRQPT  240
MAVLPNGQSI LLLDGNLVRT GLVNRPQPYR FEPVATAALQ FNGVVGRVVH STSDSSSVGL  300
GRRELNLDLN LAPPMEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-202785261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-202785564ATERF1
3gcc_A1e-202785564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU5942441e-108GU594244.1 Solanum nigrum clone 109 ethylene-responsive transcription factor (ERF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351942.11e-128PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404778e-57ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A0V0HKY41e-131A0A0V0HKY4_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000357311e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-27erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]