PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03671.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 494aa    MW: 54794.6 Da    PI: 6.0603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03671.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12340385655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  Sme2.5_03671.1_g00002.1 340 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 385
                              689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-15337393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-12338389No hitNo description
Gene3DG3DSA:4.10.280.104.1E-14339391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDHSRFQQQP ITSGLTRYRS APSSYLSSLL SSATPVSGGG CGYARDDFSH LQNSRGSATD  60
IEQVFARFVA SIGSSNSGNF PTNQQIPTSN MNVRSDVMVP KQERLVLWFR NKSETLQQTT  120
DHASASHMNY QTQPQQIEKS SAATDNSFVF LNSASGSGGT SNLTRYNSSP AGFFDQINIK  180
NEYGAMRGIG SYGIGTNAAT ETSLLTPRNF KTQVGFSSGK PPASPRLMAP ISEFKDKVWE  240
ENSTGNEHKN DDSCITDFPM PSWEDSHILS DDFLKTEDIE IEPFPNEDAS RNQNSDGLAR  300
PPIPLAHHLS LPTSTMEKLL QDSVHLNVRA KRGCATHPRS IAERVRRTRI SDRMRKLQEL  360
VPNMDKQTNT ADMLDFAVDY IKELEKQVKS MLPLDFVHDD FGVFYDLAVH EVVAQRCSFI  420
IVHVVISITP NVPKAVWDGM NNAMSLDYFP EIFGKVAMEK DMSNVLIVVI TELTFGINLN  480
APFVEVLVCG KLAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-109HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364245.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A0V0IJ500.0A0A0V0IJ50_SOLCH; Putative transcription factor bHLH-like
STRINGPGSC0003DMT4000567160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-51bHLH family protein