PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03585.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 133aa    MW: 15119.2 Da    PI: 10.3238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03585.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1945104156
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkklege 56 
                              ++y+GVr++  +g+WvAeIr+ +++ n+   + kr +l +f t  eAa+a+++a k++ g+
  Sme2.5_03585.1_g00005.1  45 CKYRGVRQKT-WGKWVAEIREpVYNtNQhqSNgKRLWLDTFSTDVEAARAYDKATKAMQGH 104
                              79*****765.**********877776695449**********99***********99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.84E-2645112No hitNo description
PfamPF008477.1E-1345104IPR001471AP2/ERF domain
SMARTSM003801.4E-2746117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2646112IPR001471AP2/ERF domain
PROSITE profilePS5103221.44346111IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-1846112IPR016177DNA-binding domain
PRINTSPR003672.2E-84758IPR001471AP2/ERF domain
PRINTSPR003672.2E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MWMNHKQEHN ATLEIGLKKK RKKSPADGSS KGCMRGKIRP ENLNCKYRGV RQKTWGKWVA  60
EIREPVYNTN QHQSNGKRLW LDTFSTDVEA ARAYDKATKA MQGHDAILNF PNYCVQNGQL  120
ANDSLSVSIA QIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17441121273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476387.12e-62PREDICTED: uncharacterized protein LOC107797978
SwissprotA2WL195e-30DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A1S4AI725e-61A0A1S4AI72_TOBAC; uncharacterized protein LOC107797978
STRINGXP_009599185.11e-61(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.18e-32ERF family protein