PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03528.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 296aa    MW: 32598.7 Da    PI: 6.6712
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03528.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.92.7e-3447101155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Sme2.5_03528.1_g00005.1  47 RPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 101
                              59****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-3244102IPR009057Homeodomain-like
PROSITE profilePS5129412.54844104IPR017930Myb domain
SuperFamilySSF466893.05E-1746103IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-2448102IPR006447Myb domain, plants
PfamPF002492.4E-949100IPR001005SANT/Myb domain
PfamPF143792.5E-26145190IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYSALGMDKN GGVNEYHHHI HNLQSSFSGE MTNLPGDTCL VLTADHRPRL RWTAELHERF  60
VDAVTQLGGP DKATPKTIMK AMGVKGLTLY HLKSHLQKYR LGRQSKEAAE NFKDESCMAE  120
SQDTTSSVSG SSKVVPQDIN DCGYQVTEAF RVQIEVQRRL HEQLEVQRHV QLRIEAQGKY  180
LQTILEKACK VLNYTSVDSP DLDTAREQLS ELAIKGANNC DGIVTVSSLP EVTASFQNKN  240
ASDIPATIGD CLPSDTTIAS PTSIGVLKKR PRALANGDAS PVDNNMAQVQ WMMTNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-2047103258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-125HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059334.10.0protein PHR1-LIKE 3-like isoform X1
SwissprotQ8LAJ71e-101PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLM0ZZT50.0M0ZZT5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000115980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-101G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]