PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03511.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 458aa    MW: 50920.2 Da    PI: 5.9975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03511.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-13286331454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  Av YI++L
  Sme2.5_03511.1_g00006.1 286 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVAYINEL 331
                              799***********************8.....8***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5131215IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.952282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-18283346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.35E-14285335No hitNo description
PfamPF000106.2E-11286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16286343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDELIVSSSS SSSSFFIPSL LSQGTQPSSS LQQLLQHILK IQTDCWSYAI FWQTSNDDYD  60
GHLFLAWGDG HFQGTKAKKE NFNNRASTTQ QSAERKNVIK GIQALICENG EEGEEEKDDV  120
NGEVTDVEWF YVMSLAQSFS IGDGVPGKTF STGSSVWLTG GQQLEFCNCE RAKEAYVHGI  180
ETLVCIPTSN GVLELGSNEV IKENFYLIQQ VKTLFSSTCG FADSALVNCS EPKTEETKTK  240
VKRALVSPES DQSDSDCQVL VESPEEKKTV KKRGRKPGAP RETPLNHVEA ERQRREKLNH  300
RFYALRSVVP HVTKMDKASL LSDAVAYINE LKSKVDDLEI QLSRKPKKPK IESTDSITVD  360
NHSTATTNSV DQIRPKPSSE VEVKILGPDA MIRVQSENVN YPSARLMRAL QGLGLHVHHA  420
SISSVNDIML QDIVVKVPRG LSTEDRLRNA LIRSLDQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-38302168193Transcription factor MYC3
4rqw_B1e-38302168193Transcription factor MYC3
4rs9_A1e-38302168193Transcription factor MYC3
4yz6_A1e-38302168193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362125.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM1A3Q90.0M1A3Q9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000140970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-82bHLH family protein